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WebJun 28, 2024 · The approach used here (and in other studies 74,75,76,77,78) may produce root-to-tip dN/dS values that are more comparable across species, since species with shared internal branches will have the ... The phylogenetic tree used for all of our described analyses (molecular, phenotypic, and combined) was the vertebrate time tree of life [22] (downloaded January 2024 using the TimeTree web resource, http://www.timetree.org/). In each analysis, we limited the phylogeny to only include taxa with data (see below for … See more Variation in the rate of testes mass evolution after accounting for body size was detected using the variable rates regression model [8, 11] following Baker et al. [10] and using the … See more Following the rationale and logic of Montgomery et al. [4], we conducted additional analyses to determine the specificity of the associations we find and exclude the possibility … See more Variation in the rate of molecular evolution was detected using codon-based substitution models as implemented in HyPhy [26]. All … See more We used our data on testes mass, body mass, and phenotypic and molecular rate heterogeneity in order to determine whether any of the proposed candidate genes [18] have driven changes in testes mass during the … See more shrine of the spirits
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WebJan 11, 2013 · It is important to note that the high root-to-tip MCPH1 dN/dS ratio for chimpanzee (Pan) is heavily influenced by a small number of synonymous substitutions … WebApr 30, 2024 · Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method. Also calculates the pN/pS ratio precisely (previously referred to as dN/dS). Usage WebThe approach used here (and in other studies [74][75][76][77][78] ) may produce root-to-tip dN/dS values that are more comparable across species, since species with shared … shrine of the sea god